Start Page: /SSF Bioinformatics Hub/1. Survey of public data (landscape)

1. Survey of public data (landscape)

Personnel

Honorific Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Last Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	First Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Organization Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Email Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Role In Study Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
Professor	Scheuermann	Richard	J. Craig Venter Institute	RScheuermann@jcvi.org	Expert Advisor
	Aevermann	Brian	J. Craig Venter Institute	baeverma@jcvi.org	Analyst
Professor	Bachelez	Herve	Paris Diderot University and ESDR representative
Professor	Schmuth	Matthias	Innsbruck University		Trustee
Professor	Simpson	Michael	King's College		Expert Advisor
Professor	Haniffa	Muzlifah	Newcastle University		Expert Advisor
Professor	Sarin	Kavita	Stanford University		Expert Advisor
	Julia	Valérie	Galderma		Industry Partner
	Litman	Thomas	LEO Pharma		Industry Partner
	Kisa	Renata	BMS		Industry Partner
	Kasujee	Ismail	Almirall		Industry Partner
Professor	Barker	Jonathan	King’s College		Trustee
Professor	Griffiths	Christopher	Manchester University and ESDR representative		Trustee

Ranking

Experiment Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Assay Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Disease Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Sample Description Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Diagnosis Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Year Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
GSE102628	Expression profiling by high throughput sequencing	Atopic Dermatitis	Skin biopsies from non-lesional, lesional, and healthy control	7 atopic dermatitis \| 6 atopic dermatitis patients stratified for filaggrin (FLG) mutations \| 9 healthy controls \| 7 ichthyosis vulgaris (IV)	2018
GSE102641	Expression profiling by array	None	T-cell Subsets	NA	2009
GSE102725	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	10 psoriasis
GSE103489	Expression profiling by high throughput sequencing	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	NA	2018
GSE104509	Expression profiling by array	Psoriasis	primary keratinocytes	NA	2018
GSE106087	Expression profiling by array	Psoriasis	CD15 microbeads to isolate peripheral neutrophils	3 psoriasis \| 3 healthy controls	2019
GSE106992	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	70 psoriasis	2019
GSE107361	Expression profiling by array	Atopic Dermatitis	Skin biopsies from non-lesional, lesional, and healthy control	11 patients (mixture of atopic dermatitis children and atopic dermatitisults)	2018
GSE107871	Expression profiling by high throughput sequencing	Psoriasis	primary monolayer KC cultures grown from lesional (PP) and non-lesional (PN) biopsies	4 psoriasis \| 4 healthy controls	2017
GSE109182	Expression profiling by high throughput sequencing	None	primary epidermal keratinocytes	NA	2018
GSE109248	Expression profiling by array	Mixed	Skin biopsies from non-lesional, lesional, and healthy control	17 psoriasis \| 6 chronic cutaneous lupus \| 12 subacute cutaneous lupus \| 7 acute cutaneous lupus\| 14 healthy control	2018
GSE111053	Expression profiling by array	Atopic Dermatitis	Skin biopsies from non-lesional and lesional epidermis	NA
GSE111054	Expression profiling by array	Atopic Dermatitis	Skin biopsies from non-lesional and lesional epidermis	NA
GSE111055	Expression profiling by array	Atopic Dermatitis	Skin biopsies from non-lesional and lesional epidermis	NA
GSE11307	Expression profiling by array	Psoriasis	Lesional skin	43 psoriasis
GSE114286	Expression profiling by high throughput sequencing	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	18 psoriasis vulgaris \| 9 healthy controls	2018
GSE114729	Expression profiling by high throughput sequencing	Psoriasis	Lesional skin	12 psoriasis	2019
GSE116486	Expression profiling by array	Atopic Dermatitis	blood	28 atopic dermatitis children \| 28 healthy controls	2019
GSE117239	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	89 psoriasis	2019
GSE117405	Expression profiling by high throughput sequencing	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	3 palmoplantar \| 8 scalp psoriasis \| 8 plaque psoriasis \| 9 healthy controls	2018
GSE11903	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	15 psoriasis	2009
GSE120721	Expression profiling by array	Atopic Dermatitis	Skin biopsies from non-lesional and lesional epidermis	5 atopic dermatitis \| 22 healthy controls	2015
GSE120899	Expression profiling by array	Atopic Dermatitis	skin biopsies	24 atopic dermatitis	2019
GSE121212	Expression profiling by high throughput sequencing	Mixed	Skin biopsies from non-lesional, lesional, and healthy control	27 atopic dermatitis \| 28 psoriasis \| 38 healthy controls	2019
GSE123785	Expression profiling by high throughput sequencing	Psoriasis	Neutrophils	8 psoriasis \| 11 healthy controls	2018
GSE123786	Expression profiling by high throughput sequencing	Psoriasis	blood	9 psoriasis \| 7 healthy controls	2018
GSE123787	Expression profiling by high throughput sequencing	Psoriasis	blood	NA	2018
GSE124700	Expression profiling by array	Atopic Dermatitis	Skin biopsies from Atopic patients and healthy controls	2 atopic dermatitis \|2 healthy controls	2019
GSE124701	Expression profiling by array	Atopic Dermatitis	blood	1 atopic dermatitis \| 1 healthy control	2019
GSE130588	Expression profiling by array	Atopic Dermatitis	Skin biopsies from non-lesional and lesional epidermis	54 psoriasis	2019
GSE133385	Expression profiling by array	Atopic Dermatitis	Skin biopsies from non-lesional and lesional epidermis	NA
GSE133477	Expression profiling by array	Atopic Dermatitis	Skin biopsies from non-lesional and lesional epidermis	NA	2019
GSE13355	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	58 psoriasis \| 64 healthy controls	2009
GSE14905	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	33 psoriasis \| 21 healthy controls	2008
GSE16161	Expression profiling by array	Mixed	Skin biopsies from non-lesional, lesional, and healthy control	9 atopic dermatitis \| 15 psoriasis \| 9 healthy controls	2009
GSE18686	Expression profiling by array	Psoriasis	Cultured macrophages \| skin biopsies from non-lesional and lesional	5 psoriasis	2010
GSE18948	Expression profiling by array	Psoriasis	PBMCs	16 Psoriasis patients	2010
GSE20264	Expression profiling by array	Psoriasis	Shave biopsies	2 psoriasis	2010
GSE24767	Expression profiling by array	Psoriasis	Human keratinocytes, HEKn	NA	2011
GSE26866	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	7 psoriasis	2012
GSE26952	Expression profiling by array	Mixed	Skin biopsies from non-lesional and healthy control	5 atopic dermatitis \| 4 psoriasis \| 5 healthy controls	2011
GSE2737	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	4 psoriasis \| 3 healthy controls	2005
GSE27887	Expression profiling by array	Atopic Dermatitis	Skin biopsies from non-lesional and lesional epidermis	10 atopic dermatitis	2011
GSE30355	Expression profiling by array	None	Healthy and Cultured keratinocytes	NA	2012
GSE30768	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	4 psoriasis	2012
GSE30999	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	85 psoriasis	2012, 2017
GSE31652	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	40 psoriasis	2012
GSE32407	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	10 psoriasis \| 10 healthy controls	2012
GSE32473	Expression profiling by array	Atopic Dermatitis	Skin biopsies from patients with Atopic Dermititis	10 atopic dermatitis	2012
GSE32620	Expression profiling by array	None	Human keratinocytes, HEKn	NA	2011
GSE32924	Expression profiling by array	Atopic Dermatitis	Skin biopsies from non-lesional and lesional epidermis	12 atopic dermatitis \| 8 healthy controls	2011
GSE34248	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	14 psoriasis	2013
GSE36381	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	NA	2012
GSE36387	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	NA	2012
GSE36842	Expression profiling by array	Atopic Dermatitis	Skin biopsies from non-lesional and lesional epidermis	10 atopic dermatitis	2012
GSE38039	Expression profiling by array	None	HaCaT keratinocytes	NA	2012
GSE40033	Expression profiling by array	Psoriasis	bone marrow mesenchymal stem cells (BMMSCs)	7 psoriasis \| 4 healthy controls \| 3 aborted fetuses
GSE40263	Expression profiling by array	Psoriasis	blood	5 psoriasis \| 5 healthy controls	2012
GSE41662	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	24 psoriasis	2013
GSE41663	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	14 psoriasis	2013
GSE41664	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	NA	2013
GSE41745	Expression profiling by high throughput sequencing	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	3 psoriasis	2012
GSE41905	Expression profiling by array	None	primary human keratinocytes	NA	2013
GSE42305	Expression profiling by array	Psoriasis	Monocytes were isolated by plastic adherence	NA	2013
GSE42632	Expression profiling by array	Psoriasis	dermal MSCs	6 psoriasis \| 6 healthy controls	2016
GSE47598	Expression profiling by array	Psoriasis	T-cells from PBMC	17 psoriasis \| 7 healthy controls	2013
GSE47751	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	20 plaque psoriasis	2014
GSE47944	Expression profiling by high throughput sequencing	Psoriasis	skin explants	8 psoriasis \| 5 healthy controls	2014
GSE47965	Expression profiling by array \| Expression profiling by high throughput sequencing	Psoriasis	skin explants	NA	2014
GSE48586	Expression profiling by array	Psoriasis	Artificial skin / human skin	NA
GSE50598	Expression profiling by high throughput sequencing / Epigenetic	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	5 psoriasis	2015
GSE50614	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	11 psoriasis	2015
GSE50790	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	4 plaque psoriasis	2012
GSE51440	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	5 psoriasis	2014
GSE52361	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	NA	2014
GSE52471	Expression profiling by array	Mixed	Skin biopsies from non-lesional, lesional, and healthy control	6 Discoid lupus erythematosus \|18 psoriasis \| 13 healthy controls	2014
GSE53431	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	12 plaque psoriasis	2015
GSE53552	Expression profiling by array	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	25 psoriasis	2014
GSE54456	Expression profiling by high throughput sequencing	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	92 psoriasis \| 82 healthy controls	2014, 2015, 2017
GSE55201	Expression profiling by array	Psoriasis	Blood	44 psoriasis \| 30 healthy controls	2014
GSE5667	Expression profiling by array	Atopic Dermatitis	Skin biopsies from non-lesional, lesional, and healthy control	6 atopic dermatitis \| 5 healthy controls	2007, 2010
GSE57225	Expression profiling by array	Mixed	Skin biopsies from non-lesional, lesional, and healthy control	24 psoriasis and actopic dermititis	2014
GSE57376	Expression profiling by array	Psoriasis	Blood	5 psoriasis \| 3 rheumatoid arthritis \| 3 psoriasis arthritis	2014
GSE57383	Expression profiling by array	Psoriasis	Blood	9 rheumatoid arthritis \| 12 psoriasis arthritis \| 10 psoriasis \| 19 healthy controls	2014
GSE57386	Expression profiling by array	Psoriasis	Blood	NA	2014
GSE57405	Expression profiling by array	Mixed	Blood	9 rheumatoid arthritis \| 12 psoriasis arthritis \| 10 psoriasis \| 19 healthy controls	2014
GSE58121	Expression profiling by array	Allergic Contact Dermatitis and Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	8 psoriasis \| 3 lichen planus \| 7 healthy controls	2014
GSE58558	Expression profiling by array	Atopic Dermatitis	Skin biopsies from non-lesional and lesional epidermis	19 atopic dermatitis	2014
GSE58749	Expression profiling by array	Psoriasis	Blood	NA	2015
GSE59294	Expression profiling by array	Atopic Dermatitis	Skin biopsies from non-lesional and lesional epidermis	18 atopic dermatitis	2014
GSE60481	Expression profiling by high throughput sequencing	Atopic Dermatitis	Blood	5 atopic dermatitis + HSV \|6 atopic dermatitis
GSE60709	Expression profiling by array	Atopic Dermatitis	Blood and Skin Biopsies	19 psoriasis \| 14 healthy controls	2014
GSE60971	Expression profiling by array	Psoriasis	HaCaT cells	NA	2018
GSE61281	Expression profiling by array	Psoriasis	Blood	20 psoriasis arthritis \| 20 Cutaneous Psoriasis \| 12 healthy controls	2015
GSE62408	Expression profiling by high throughput sequencing	Mixed	seven peripheral blood leukocyte populations	NA	2014
GSE63079	Expression profiling by high throughput sequencing	None	priamry human keratinocytes	NA	2015
GSE63741	Expression profiling by array	Mixed	Skin biopsies from non-lesional, lesional, and healthy control	30 psoriasis (Pso) \| 30 atopic dermatitis \| 30 lichen planus (Li) \| 30 contact eczema (KE) \| 30 healthy controls	2015
GSE63979	Expression profiling by high throughput sequencing / Epigenetic	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	34 psoriasis \| 8 healthy controls	2014, 2015, 2017
GSE63980	Expression profiling by high throughput sequencing	Psoriasis	Skin biopsies from non-lesional, lesional, and healthy control	NA	2014, 2015, 2017
GSE65832	Expression profiling by high throughput sequencing	Atopic Dermatitis	Skin biopsies from non-lesional, lesional, and healthy control	20 psoriasis	2015